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VISDB
Viral Integration Site DataBase
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TVIS10004268
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004268
Fusion event
HBV-IMPAD1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57885492/56972933 (Hg38)
End
57885492/56972933 (Hg38)
Location type
Intronic
Target gene
IMPAD1
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-16-5p
;
hsa-mir-4719
;
hsa-mir-507
;
hsa-mir-557
;
hsa-mir-450b-5p
;
hsa-mir-6868-3p
;
hsa-mir-5003-5p
;
hsa-mir-3124-3p
;
hsa-mir-676-5p
;
hsa-mir-205-5p
;
hsa-mir-513b-5p
;
hsa-mir-19b-2-5p
;
hsa-mir-19b-1-5p
;
hsa-mir-19a-5p
;
hsa-mir-8064
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
Nearest miRNA
hsa-mir-124-1/Upstream/14076658; hsa-mir-10400/Downstream/4741855;
Nearest TSS
ENST00000518652/Upstream/316468;
ENST00000519314/Downstream/7179;
Nearest CpG islands
None/Target,
chr8-CpG: 109/Upstream/524677
,
chr8-CpG: 77/Downstream/20208
Upstream sequence
gatggcagcaatagaaactggggactactagatgggggatggagggagctagaggggaaagagttgaaaaactattgagtactatgctcagtacctggat
Downstream sequence
agggatgggctaactctactgttttgtataatgcagtcaggtttatgaccaggacagcccttatctacaaaaccgctaacccccgagtcttgaaaggaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
080420N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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