Basic Information
VIS ID
TVIS10004277
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
28942662/28942555 (Hg38)
End
28942662/28942555 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/11786563; hsa-mir-103a-1/Downstream/2993547;
Nearest TSS
ENST00000502646/Upstream/133306; ENST00000602801/Downstream/200948;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/14025, chr5-CpG: 37/Downstream/2251290
Nearby gene
LSP1P3(-15242) ; LOC101929645(+122689) ;
Upstream sequence
TGGCATCTGATGCTTCCACAGTCCCAAAAGGAACGCCTGTGTCAGCTCACCTTGGGACCGAAATGGCAGAGAGGCCCTTCTCCCCGGAGCTGAGTCCACC
Downstream sequence
gattcccctctggctggggctgatctaaacgctcctgcatgggcaccagctaaattctcccctgtgttgctttctactgtgactagcagtgctgggttcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate