Basic Information
VIS ID
TVIS10004284
Fusion event
HBV-LINC00970 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
168952360/168983122 (Hg38)
End
168952360/168983122 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00970
Nearest miRNA
hsa-mir-101-1/Upstream/607501; hsa-mir-1182/Downstream/1168256;
Nearest TSS
ENST00000473358/Upstream/196183; ENST00000415637/Downstream/103883;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/756521, chr1-CpG: 153/Downstream/122406
Upstream sequence
TGCTTCCCGTAAATGCTGGATTGTGTTTTTCCATAAACATTTACTTGTGTTCTTTTCTGATTTTTTTTTTTTTTTTACCTTGGCTCTCATCCACCAAATG
Downstream sequence
GATAGAAGTACAGGCTTCATCAAGGGCCCAGCGGCCAGAGGAACAATAGTGATTCTATCCGTGTCAATGTCCATGCCCTTGGATGTCACTTAATCTTTCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate