Basic Information
VIS ID
TVIS10004294
Fusion event
HBV-chr22 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
31422856/31026870 (Hg38)
End
31422856/31026870 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA22B
Nearest miRNA
hsa-mir-1286/Upstream/295229; hsa-let-7a-3/Downstream/133192;
Nearest TSS
ENST00000624155/Upstream/48022; ENST00000422839/Downstream/37235;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/57281, chr22-CpG: 58/Downstream/54016
Nearby gene
TUG1(-47476) ; SMTN(+54426) ;
Upstream sequence
ggctgcccagtctggaaagtgaggagcgtctctgcccggccgccatcccatctaggaagtgaggagcgcctcttccccgccgccatcccatctaggaagt
Downstream sequence
gaggagcgtctctgcccggccgcccatcgtctgagatgtggagagcacctctgccccgccgccctgtctgggatgtgaggagcgcctctgctgggccgca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate