Basic Information
VIS ID
TVIS10004295
Fusion event
HBV-TRIM51EP integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
89717067/89983899 (Hg38)
End
89717067/89983899 (Hg38)
Location type
Intronic
Target gene
TRIM51EP
Nearest miRNA
hsa-mir-10392/Upstream/1807306; hsa-let-7a-2/Downstream/571875;
Nearest TSS
ENST00000527297/Upstream/15397; ENST00000448984/Downstream/47207;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3266, chr11-CpG: 88/Downstream/67836
Nearby gene
TRIM64(-9827) ; TRIM53AP(+9642) ;
Upstream sequence
cggctgggcagagacgctcctcacatcccagacggggcggcggggcagaggcgctccccacatctcagaggatgggcggccgggcagagacgctcctcac
Downstream sequence
ttcctagatgggatggcggcggggaagaggcgctcctcacttcctagatgggatggcggccgggcagagacgctcctcactttccagactgggcagccag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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