Basic Information
VIS ID
TVIS10004299
Fusion event
HBV-LINC02139 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
85176444/85142838 (Hg38)
End
85176444/85142838 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC02139
Nearest miRNA
hsa-mir-1225/Upstream/1634430; hsa-mir-11401/Downstream/64958;
Nearest TSS
ENST00000527434/Upstream/5688; ENST00000574293/Downstream/3163;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/5121, chr16-CpG: 24/Downstream/20291
Upstream sequence
GCCTAGCAGACACAGGGGTTCCGTGAAGAGTGTCGGGGTTGTAGGGGGGCAGTGGGGGAGGAAAGAAGGCGTCACTGCTGCCCAACCTGGCCAGGGATGA
Downstream sequence
AGGGGCCTCCCCGTCCCCTAACCCACAACCTAGCGCCTCCCCTGCGTGGCTCTGTGGCCACAACACCCCGGGGCCCTGACCTGCCCCGCCAAAAGCTGCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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