KIF5C _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004300
Fusion event
HBV-KIF5C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q23.1
Reference genome
End
149671327/148913758 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-128-1/Upstream/8327073; hsa-mir-10b/Downstream/416520;
Upstream sequence
CCATCATGAGACTCAGCGTAACTGGGAGAGGTTTGTCGAGCGGCAGTTTGACCGGATGGTACTGCACTGTGCCAGGAAGCCCCACCAGGGCGGTGTACCC
Downstream sequence
CAGAGAGAAGGCTCAGTGCTATCCTTGTTATCTTCCATTTGGCGCAAGAGATCCTCCATTCTACCTTCTGTGAAATGGCTTTTTCACCTCCCATCCAGTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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