Basic Information
VIS ID
TVIS10004307
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
56445093/56677617 (Hg38)
End
56445093/56677617 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/8580759; hsa-let-7a-2/Downstream/66256;
Nearest TSS
ENST00000527297/Upstream/13955; ENST00000312153/Downstream/21478;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/802973, chr11-CpG: 78/Downstream/646780
Nearby gene
OR5AR1(-12999) ; OR9G9(+22771) ;
Upstream sequence
aaatatcatttaccataatcaactgggatttatcccagggtgcaaggatagttcaatatatgtaagtcaataaatgtggtacatcaccaaaaaaaataat
Downstream sequence
gggaaaagccatagatgcaaaaaaaaaaaaaaaaaaataagtatagaagacatgtacctcaacattccgcaacaataaaggctatgtatgacgggcccac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate