hsa-mir-497-3p _LIHC.png
DPP6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004317
Fusion event
HBV-DPP6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q36.2
Reference genome
GRCh37/hg19
Start
153597369/153900284 (Hg38)
End
153597369/153900284 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
DPP6
miRNAs that regulate target gene
hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-4668-5p ; hsa-mir-3153 ; hsa-mir-513b-3p ; hsa-mir-1276 ; hsa-mir-497-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p
Nearest miRNA
hsa-mir-10399/Upstream/2466645; hsa-mir-153-2/Downstream/3674052;
Nearest TSS
ENST00000635602/Upstream/13187; ENST00000462622/Downstream/138320;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11703, chr7-CpG: 192/Downstream/151038
Upstream sequence
taatcaaaatctagaaatgattaagcttagtgaggccgccagttcaaaagccaagctagtccaaaagctggaccttttctgaatgataaaaaagtgacac
Downstream sequence
taaagctgctttcagattttcaggtatctttgtagcaatgccccattccttggtatgtgttgctataaaggcatacctgaggctgggtaatctttaagga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate