Basic Information
VIS ID
TVIS10004320
Fusion event
HBV-LOC112268176 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
23031982/23020661 (Hg38)
End
23031982/23020661 (Hg38)
Location type
Intronic
Target gene
LOC112268176
Nearest miRNA
hsa-mir-1225/Upstream/1514526; hsa-mir-11401/Downstream/1182455;
Nearest TSS
ENST00000527434/Upstream/324; ENST00000300061/Downstream/51887;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/72106, chr16-CpG: 120/Downstream/127939
Nearby gene
HS3ST2(-104323) ; USP31(+40746) ;
Upstream sequence
AGACGTTCCTGTTCCATTTGTCCCGCAAACGTTTAAACATCACACATACTTGGTTAAGGTAGGAAATAAAAAACAGCCTTTGTTCATTCTCTCTCTCTCt
Downstream sequence
tttttttttttttttttttttttttttgagatggaatttaacgcttgtcgcccaggctaaagtgcagtggttcgatctcggctcactgcaacctccgcct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate