Basic Information
VIS ID
TVIS10004329
Fusion event
HBV-LOC105373622 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
133027492/132269919 (Hg38)
End
133027492/132269919 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373622
Nearest miRNA
hsa-mir-1285-2/Upstream/12839; hsa-mir-10b/Downstream/163792;
Nearest TSS
ENST00000437798/Upstream/11950; ENST00000622084/Downstream/24458;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/11752, chr2-CpG: 79/Downstream/82824
Nearby gene
ANKRD30BL(-11950) ; GPR39(+146655) ;
Upstream sequence
agagagaagcagacagacagggagggagggagacagacagagagagggagacagacagagaATGGGAGACAGACAGACAGGCAGAGAAAGAGAGTAAGAC
Downstream sequence
AGAAGATAGGCACAGACagagagacaggcacagagagagagacagacagatagagaaaaagaaagagacaagccgggcacgatggctcatgcttgtcatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate