Basic Information
VIS ID
TVIS10004353
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
121170623/121530569 (Hg38)
End
121170623/121530569 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/4510250; hsa-mir-10399/Downstream/5527519;
Nearest TSS
ENST00000635602/Upstream/134205; ENST00000471837/Downstream/119791;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/133953, chr7-CpG: 72/Downstream/342423
Nearby gene
FAM3C(-134201) ; PTPRZ1(+342536) ;
Upstream sequence
ggtacatatatatgtttatatatgtgtacacacattatacatatatatatacgcacacatatatatatataCACTTTCATTGGGAGAATTAAAATTAGCC
Downstream sequence
ctgttcacaactctctggctcaaatgaatcacacagccccattcaaacacaagggagcaaagacgtgtcaatctactcagcacccaggagggcaaaacag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate