Basic Information
VIS ID
TVIS10004357
Fusion event
HBV-LOC105378178 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49354641/48885438 (Hg38)
End
49354641/48885438 (Hg38)
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/1124334; hsa-mir-1185-1/Downstream/1080961;
Nearest TSS
ENST00000550708/Upstream/393671; ENST00000557531/Downstream/192067;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1209052, chr14-CpG: 30/Downstream/700494
Nearby gene
LINC00648(-1090424) ; RPS29(+688749) ;
Upstream sequence
ttgcaaagaaggagcatttgatttcattgtatttttattgtgtttttgttttctatttcactgattgctactctgatattattctctttcttccacaata
Downstream sequence
gcgggagagtgctcctttttttactagtttcttaaaatggaaactgaggtaactgatttgagaattttttcaaataaatatgtttaatactgtaaatttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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