CAMTA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004360
Fusion event
HBV-CAMTA1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p36.31
Reference genome
GRCh37/hg19
Start
6836607/6776547 (Hg38)
End
6836607/6776547 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA1A
Target gene
CAMTA1
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p
Nearest miRNA
hsa-mir-12136/Upstream/346651; hsa-mir-101-1/Downstream/2089955;
Nearest TSS
ENST00000473358/Upstream/8593; ENST00000486138/Downstream/8296;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/74476, chr1-CpG: 245/Downstream/7706
Nearest cancer related gene
CAMTA1(TSG, No orient, 0)
Upstream sequence
cctctttagagagaggcagagggagatctgacacatacacaggggagagagggcaatgtgaagatggagcagagagagatttgaagatgctagccttgaa
Downstream sequence
aattggagtgatgtggctacaagccaaggaatgccggcagccactagcagttggaagaggcaaggaatgaattctccctagagcctttggaaggagtgtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate