Basic Information
VIS ID
TVIS10004369
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
19044018/19043909 (Hg38)
End
19044018/19043909 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5E
Nearest miRNA
hsa-mir-10397/Upstream/1887917; hsa-mir-103a-1/Downstream/12892193;
Nearest TSS
ENST00000502646/Upstream/5110; ENST00000513573/Downstream/98437;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1388295, chr5-CpG: 45/Downstream/1261544
Nearby gene
LINC02111(-1656599) ; CDH18(+429137) ;
Upstream sequence
CGCGGCATCGCGGGGGTGGCCGGGGCCAGGGCTTCCCACGTGCGCAGCAGGACGCAGCGCTGCCTGAAACTCGCGCCGCGAGGAGAgggcggggccgcgg
Downstream sequence
atttcctcctgttttcaggttatttattcttctagattgggtttttgtctgcagtttgcttattacatttcttACACTTATGTTTTAGTGTAATCACTAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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