Basic Information
VIS ID
TVIS10004375
Fusion event
HBV-PGR-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
101023460/101152729 (Hg38)
End
101023460/101152729 (Hg38)
Location type
ncRNA_intronic
Target gene
PGR-AS1
Nearest miRNA
hsa-mir-10392/Upstream/4811203; hsa-let-7a-2/Downstream/367091;
Nearest TSS
ENST00000527297/Upstream/22205; ENST00000532529/Downstream/302848;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/23023, chr11-CpG: 114/Downstream/429897
Upstream sequence
tagaacaccaggatttatttctcttatctaattgtaactttgtacccattgagtatcctcttcccatcctcccctttcccctcctctctccagtttctgg
Downstream sequence
tgaacattctactatctgcttctgtgatatcaatgaatttttaaaattctgcatatgagtgagattatgtggtatttatctttctgtgtctaacttattt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate