VISDB Viral Integration Site DataBase

VIS ID

TVIS10004381

Fusion event

HBV-PLEKHA6 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

204236237/204267109 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-412-3p ; hsa-mir-136-5p ; hsa-mir-377-3p ; hsa-mir-485-5p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-3074-3p ; hsa-mir-410-3p ; hsa-mir-5011-5p ; hsa-mir-8066 ; hsa-mir-574-5p ; hsa-mir-1279 ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-2054 ; hsa-mir-6081 ; hsa-mir-3166 ; hsa-mir-4468 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-5699-5p ; hsa-mir-3121-3p ; hsa-mir-455-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-7162-3p ; hsa-mir-4649-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3120-5p ; hsa-mir-6728-3p ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-4714-5p ; hsa-mir-4290 ; hsa-mir-18a-3p ; hsa-mir-1324 ; hsa-mir-3163

Nearest miRNA

hsa-mir-101-1/Upstream/2263873; hsa-mir-1182/Downstream/1181193;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/9329, chr1-CpG: 62/Downstream/110495

Upstream sequence

ggtgctgtggatacagcagtgaccaacactgacaaaagttcctgccttcacagatgggactgtgcattccagtgggataggaagaaaggccacacacaaG

Downstream sequence

CTCCAATTAGTAGGTGACCTACTAGTAGTGACTAGTGACCTCCTCCTCTTTGTGCTCATCCTCTCTCCCCATTCCTCCAGGACTTCACCAGCCATATGAC