LRRC4C _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004382
Fusion event
HBV-LRRC4C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
41371669/41350119 (Hg38)
End
41371669/41350119 (Hg38)
Location type
Intronic
Target gene
LRRC4C
Nearest miRNA
hsa-mir-1343/Upstream/5339915; hsa-let-7a-2/Downstream/2209537;
Nearest TSS
ENST00000527297/Upstream/1030389; ENST00000524493/Downstream/44476;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4839652, chr11-CpG: 49/Downstream/1961770
Upstream sequence
gtctcttgcagtatcacatgtcataagtcagatagcctctggaaaactccaccgtacacttgtgaaagaatgaaagttaaaaaggcaaatgacatcttgg
Downstream sequence
tattattatgaaatagttttgacctcagtgactacctgtatagatctgaggtccccagaacacactttgagaaccactgACCTATAAGATCTTTTTGAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate