DLG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004387
Fusion event
HBV-DLG2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83656793/83945750 (Hg38)
End
83656793/83945750 (Hg38)
Location type
Intronic
Target gene
DLG2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10392/Upstream/2054914; hsa-let-7a-2/Downstream/2332583;
Nearest TSS
ENST00000527297/Upstream/220347; ENST00000534275/Downstream/221252;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/659257, chr11-CpG: 24/Downstream/1682549
Upstream sequence
TTTAGTTATAAAATCTAAATACTGTTGTACAAATTCTGTGTTTGGTAACTCTTGCTCAGGAGCAATGATTTTCTTTGCACATTATCACTAGTAGTCTCAG
Downstream sequence
TGGTTTAGGGTCGTCCGCTATTTTAATGAAAATTTATCCTATGAGAGAAATGCCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate