Basic Information
VIS ID
TVIS10004393
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
122697695/119935417 (Hg38)
End
122697695/119935417 (Hg38)
Location type
Intronic
Target gene
LINC01613 ; LOC107987122
Nearest miRNA
hsa-let-7a-1/Upstream/5725888; hsa-mir-12126/Downstream/309562;
Nearest TSS
ENST00000422679/Upstream/364; ENST00000454204/Downstream/37677;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/565481, chr9-CpG: 40/Downstream/559342
Nearby gene
BRINP1(-565956) ; MIR147A(+309562) ;
Upstream sequence
TGATATTCGTACACAGTTGGGATCACAAATGAAAAAAAAATGCGAAATTTACTCCAAGACCATTGTAAGCCCCATGGTTTCAGAATACACTAATGAAAGA
Downstream sequence
caggcggcctgattcTCACATCTCCCCTGGCCTCAAAATTATTTCCATATTCATATGAAAAACCCCAGCCAGTCACAAGAGCCCATACAGTGTCCAGTGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate