Basic Information
VIS ID
TVIS10004399
Fusion event
HBV-LINC02756 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
91529818/91796652 (Hg38)
End
91529818/91796652 (Hg38)
Location type
Intronic
Target gene
LINC02756
Nearest miRNA
hsa-mir-10392/Upstream/927450; hsa-let-7a-2/Downstream/1937022;
Nearest TSS
ENST00000527297/Upstream/1345; ENST00000525832/Downstream/6703;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1573462, chr11-CpG: 204/Downstream/427817
Nearby gene
DISC1FP1(-881598) ; FAT3(+555444) ;
Upstream sequence
ccaattttttttttttttttttttttgtagagataggatcttactatgttgctcaggctgatgctaaacccctggcctcaagtggttctcctggctcagc
Downstream sequence
ctcccaaagcactgggattataggcatgagccaccacacctggcctggttgaactattttagatatttcaccatgattgcaatggtacaattatagctca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate