DPP10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004406
Fusion event
HBV-DPP10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
115574853/114817276 (Hg38)
End
115574853/114817276 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
DPP10
Nearest miRNA
hsa-mir-1285-2/Upstream/1095908; hsa-mir-10b/Downstream/12606261;
Nearest TSS
ENST00000437798/Upstream/355673; ENST00000492708/Downstream/16272;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/154592, chr2-CpG: 185/Downstream/343884
Upstream sequence
TGCTACTGAGGATACTGGCAAAATGAGGCAGCCTCTGCCTTCTCAGCCATCAAGAGTAATTATGTAATGCCATATAGACAAAGATTAGACCTATAGTGAT
Downstream sequence
AGGGGGAtatcagccagtgtcctggccaaaaaaaaaaaaaggctcacatgaaaggatttaaccaaagagatgttaatgaagctatgccactcttatgtac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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