VISDB Viral Integration Site DataBase

VIS ID

TVIS10004407

Fusion event

HBV-GRPEL2 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr5

Cytoband

q32

Reference genome

Start

End

148733195/149353632 (Hg38)

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-375 ; hsa-mir-30a-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-mir-196a-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-196b-5p ; hsa-mir-410-3p ; hsa-mir-1245a ; hsa-mir-4257 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-6073 ; hsa-mir-6847-5p ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-4672 ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4496 ; hsa-mir-95-5p ; hsa-mir-621 ; hsa-mir-3942-5p ; hsa-mir-4490 ; hsa-mir-4703-5p ; hsa-mir-4766-3p ; hsa-mir-580-5p ; hsa-mir-1257 ; hsa-mir-4697-3p ; hsa-mir-5579-3p ; hsa-mir-6882-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-6859-5p ; hsa-mir-520g-5p ; hsa-mir-655-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-595 ; hsa-mir-2116-5p ; hsa-mir-4255 ; hsa-mir-4677-5p ; hsa-mir-497-3p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-523-5p ; hsa-mir-518f-5p ; hsa-mir-526a ; hsa-mir-520c-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-522-5p ; hsa-mir-519a-5p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548t-3p ; hsa-mir-548z ; hsa-mir-548aa ; hsa-mir-548ac ; hsa-mir-548ap-3p ; hsa-mir-1295b-3p ; hsa-mir-548bb-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548n ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-4792 ; hsa-mir-7158-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-4517 ; hsa-mir-5680 ; hsa-mir-758-3p ; hsa-mir-1911-5p ; hsa-mir-624-5p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-3908 ; hsa-mir-590-5p ; hsa-mir-224-5p ; hsa-mir-8485 ; hsa-mir-582-3p ; hsa-mir-4777-5p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-889-3p ; hsa-mir-4747-3p ; hsa-mir-4499 ; hsa-mir-6768-5p ; hsa-mir-22-5p ; hsa-mir-802 ; hsa-mir-4803

Nearest miRNA

hsa-mir-10397/Upstream/291223; hsa-mir-103a-1/Downstream/75286;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/7870, chr5-CpG: 27/Downstream/4151

Upstream sequence

caatgacaaaaatggcaattactttcgcgccaTAATATTTCTCATGTGATCcacctggggggcattaagaaagataccgatgcactagcttcacctctgg

Downstream sequence

tcactatattgtccaggctagAAGAATTTTCTAATGGTCTATTACACCTCCCGTTTTGGCAAGTAAATTCAGAATAATTTTAGGTTCTTTTGTTATTCAG