COL22A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004409
Fusion event
HBV-COL22A1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
139694841/138682598 (Hg38)
End
139694841/138682598 (Hg38)
Location type
Intronic
Target gene
COL22A1
miRNAs that regulate target gene
hsa-mir-5587-5p ; hsa-mir-432-3p ; hsa-mir-4436b-5p ; hsa-mir-197-3p ; hsa-mir-1193 ; hsa-mir-6500-3p
Nearest miRNA
hsa-mir-1204/Upstream/3877653; hsa-mir-10400/Downstream/2049966;
Nearest TSS
ENST00000518652/Upstream/61978; ENST00000518354/Downstream/39595;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/185067, chr8-CpG: 60/Downstream/195040
Upstream sequence
AGTAACTTGAATATCTTCACCTTGAAACTCTTGGAAAACTGATTGAAATATGGCTCATAAGCAGAGTTCATCAGAATTAATTGAGAGTTAATTAAGAATA
Downstream sequence
gcctcatgcctcagtgtctttttccctgttaattcccctgccaatgactccttcttcaacttcttcccctgctaactgctgatgcactttattttatttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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