PHACTR3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004410
Fusion event
HBV-PHACTR3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
58399816/59824761 (Hg38)
End
58399816/59824761 (Hg38)
Location type
Intronic
Target gene
PHACTR3
miRNAs that regulate target gene
hsa-mir-3181
Nearest miRNA
hsa-mir-103a-2/Upstream/1006448; hsa-mir-1-1/Downstream/483713;
Nearest TSS
ENST00000382410/Upstream/103551; ENST00000492611/Downstream/11092;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/219029, chr20-CpG: 184/Downstream/107939
Upstream sequence
TCACACACATCAGAAATCTTGGAACTGGAACTGGCAGGTTAGAGAATATATGCATCTGTCATTTTTGACCTGAGCATTGACCACCAGGGAATGCCCCTGA
Downstream sequence
TTGACAGCCCCACCAGTGGGGGGGCGGGGGGAGGGGCTCTGTCTACACTCCTGTCAACATTGTGGATTTTCCAACTTTCTGCCCTCTGCTGATCTGGAGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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