ZCWPW2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004437
Fusion event
HBV-ZCWPW2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
28459528/28418037 (Hg38)
End
28459528/28418037 (Hg38)
Location type
Intronic
Target gene
ZCWPW2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-12127/Upstream/2753098; hsa-let-7g/Downstream/2743667;
Nearest TSS
ENST00000440867/Upstream/4918; ENST00000419130/Downstream/17187;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/68673, chr3-CpG: 111/Downstream/157135
Upstream sequence
AAGATGTTTCTTTCAGTATAATTTTTCCAGGAAGTTATGACTTAATTATACAGTTAAAGGATAAATTCCACTCATTTTAATACTTAATTTCCCCAGTCAT
Downstream sequence
ataacgggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatcgtctcagcccaaaatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate