Basic Information
VIS ID
TVIS10004438
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
20577127/20535635 (Hg38)
End
20577127/20535635 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/397994; hsa-let-7g/Downstream/5129238;
Nearest TSS
ENST00000440867/Upstream/147386; ENST00000412369/Downstream/690670;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/349171, chr3-CpG: 86/Downstream/1836366
Nearby gene
SGO1-AS1(-349208) ; VENTXP7(+870091) ;
Upstream sequence
AAATTCCAGACATCCCACTCATGTTCACAATTAAACTAagacagtctttctcattttaaagataggtcgtgttcctagcttatgaagaatttccatcagg
Downstream sequence
gtgctcaccacccccaacccctccacaacccttcccagcctctgataactatccttctactctctatgtccatttcaattgtttggattCAAAAGATCTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate