Basic Information
VIS ID
TVIS10004439
Fusion event
HBV-LOC101928882 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
180556875/180839087 (Hg38)
End
180556875/180839087 (Hg38)
Location type
ncRNA_intronic
Target gene
LOC101928882
Nearest miRNA
hsa-let-7g/Upstream/4323936; hsa-mir-1224/Downstream/3047713;
Nearest TSS
ENST00000440867/Upstream/101213; ENST00000491674/Downstream/29054;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/9959, chr3-CpG: 62/Downstream/73277
Upstream sequence
atcagaacctgaggctctgtctctataaaggaactggcaagactaggtgaactctaaatttcctactatctctaaaattttgtgaatctaACTGCAGGCT
Downstream sequence
AATATATCAATCTAGTGTCTCAAGACATCTATCACATACTAAAAAGTTGCTGAGTTTATATTACATCCAAGTTCTACTTTCCACCAGGGATCCACACAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate