Basic Information
VIS ID
TVIS10004441
Fusion event
HBV-LOC105376984 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
19760394/19718902 (Hg38)
End
19760394/19718902 (Hg38)
Location type
Intronic
Target gene
LOC105376984
Nearest miRNA
hsa-mir-12127/Upstream/403971; hsa-let-7g/Downstream/418663;
Nearest TSS
ENST00000440867/Upstream/371181; ENST00000443878/Downstream/179922;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/570294, chr3-CpG: 87/Downstream/227939
Nearby gene
KCNH8(-183259) ; EFHB(+160572) ;
Upstream sequence
GTGTTTTTGTTTGTTTTACAAAGATATATGGTACTATAAAACAAATTCTTCTTCATTAGTTTCTATTTTTCTTCCTGTGTCCTTTTGAAAGGTAAGCACA
Downstream sequence
TTAGGTGTGTTTAGAATACAAGGTAAGTTGAGGAATAGTAATAGAATTTGAAACTGAAAAACCGCAAGAAAATGGATGTCTTTAAATGCCAAGATAAATA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate