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VISDB
Viral Integration Site DataBase
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TVIS10004445
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004445
Fusion event
HBV-GRIN2B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
13917086/13764152 (Hg38)
End
13917086/13764152 (Hg38)
Location type
Intronic
Target gene
GRIN2B
miRNAs that regulate target gene
hsa-mir-1277-5p
;
hsa-mir-297
;
hsa-mir-3924
;
hsa-mir-190a-3p
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-511-3p
;
hsa-mir-5011-5p
;
hsa-mir-4768-5p
;
hsa-mir-6833-3p
;
hsa-mir-6807-5p
;
hsa-mir-4303
;
hsa-mir-6873-3p
;
hsa-mir-6751-3p
;
hsa-mir-1199-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-4267
;
hsa-mir-6858-3p
;
hsa-mir-1179
;
hsa-mir-4762-3p
;
hsa-mir-4766-5p
;
hsa-mir-3160-5p
;
hsa-mir-500a-5p
;
hsa-mir-495-5p
;
hsa-mir-6749-3p
;
hsa-mir-525-5p
;
hsa-mir-520a-5p
;
hsa-mir-4769-3p
;
hsa-mir-4469
;
hsa-mir-4667-3p
;
hsa-mir-1470
;
hsa-mir-5196-3p
;
hsa-mir-6502-3p
;
hsa-mir-126-3p
;
hsa-mir-3180-5p
;
hsa-mir-6515-3p
;
hsa-mir-2116-3p
;
hsa-mir-532-3p
;
hsa-mir-6795-3p
;
hsa-mir-6887-3p
;
hsa-mir-501-5p
;
hsa-mir-670-3p
;
hsa-mir-1304-3p
;
hsa-mir-3691-3p
;
hsa-mir-483-3p
;
hsa-mir-3184-3p
;
hsa-mir-5581-5p
;
hsa-mir-4297
;
hsa-mir-6849-3p
;
hsa-mir-3614-3p
;
hsa-mir-6792-3p
;
hsa-mir-4691-5p
;
hsa-mir-5699-5p
;
hsa-mir-519d-5p
;
hsa-mir-1265
;
hsa-mir-4257
Nearest miRNA
hsa-mir-1244-3/Upstream/848234; hsa-let-7i/Downstream/3909147;
Nearest TSS
ENST00000382841/Upstream/88332;
ENST00000538329/Downstream/215831;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/200052
,
chr12-CpG: 23/Downstream/217540
Upstream sequence
AATACAATCCACTAGGATGGATGCCCAGCTCCTAACCTGATACAGGGAGAAACACACGAAAACTACTTTTCTAACCACACAATTGTGTCCGCAGTCCTAG
Downstream sequence
AAAAGAGCCTATCCTTCTCTATATCCATACCAAAAAAAAAAAAAAAAAGGATATTAGTTTAGAACGTACAGAATGCTAAGGATCCAGTTGCCAACACAGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
084013N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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