GRID2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004447
Fusion event
HBV-GRID2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
94716442/93795291 (Hg38)
End
94716442/93795291 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
GRID2
miRNAs that regulate target gene
hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-448
Nearest miRNA
hsa-mir-12113/Upstream/6494708; hsa-mir-1243/Downstream/5202096;
Nearest TSS
ENST00000502981/Upstream/26061; ENST00000306011/Downstream/33462;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1489435, chr4-CpG: 112/Downstream/33053
Nearby gene
GRID2(-20736) ; ATOH1(+33636) ;
Upstream sequence
tggctgcatagtattccatggtgtgtatgtgccacattttctttatctagtctatcactgatggacatttgggttagctccaagtctttgctctagtgaa
Downstream sequence
AAGGCAAAAAGACTTATAGAAGCATCATGAAGAAAAAGACTATGTAAGTGTGtattatatatatgttatatattattttaaaaaGGAATCATATACCTTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate