ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004448
Fusion event
HBV-ALB integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74286974/73421257 (Hg38)
End
74286974/73421257 (Hg38)
Location type
UTR3
Target gene
ALB
miRNAs that regulate target gene
hsa-mir-492
Nearest miRNA
hsa-mir-12113/Upstream/7144329; hsa-mir-1243/Downstream/3152311;
Nearest TSS
ENST00000502981/Upstream/1710; ENST00000513720/Downstream/9881;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/161844, chr4-CpG: 20/Downstream/199070
Upstream sequence
aaggccatctatgagccaggaagtgggccctcaccagacaacaaacctgcaggcaccttgatcttggacttcccagcccccagaacagtaaaaaataaat
Downstream sequence
AGAGTGGTACAGCACTGTTATTTTTCAAAGATGTGTTGCTATCCTGAAAATTCTGTAGGTTCTGTGGAAGTTCCAGTGTTCTCTCTTATTCCACTTCGGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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