Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004454
Fusion event
HBV-FANCC integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
Start
End
98004783/95242501 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-15b-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5192 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-3613-3p ; hsa-mir-6760-5p ; hsa-mir-7844-5p ; hsa-mir-5007-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-587 ; hsa-mir-302c-5p ; hsa-mir-873-5p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-1273f ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6812-3p ; hsa-mir-6733-3p
Nearest miRNA
hsa-let-7a-1/Upstream/156407; hsa-mir-12126/Downstream/2121053;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/156258, chr9-CpG: 25/Downstream/49912
Upstream sequence
AAGCTTTGTTTCCTGTGGTAGGAGAGTGTCTTAAAACTCATCCCAAAACTTGCCATCCTCTTTGGTTAAGGGGAGGGAAGATCTGTTCACTTCAGAGTGG
Downstream sequence
aaaggaaaTGTCAGTTTATGAGTTTATGAAGCTTAAATCTAAAAGAATACCCAAAACTGGGAGTTTCCCCAGGTGTTGAGTGATTATGCAAACTTAGTTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.