PIP5K1B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004455
Fusion event
HBV-PIP5K1B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
68810431/68810431 (Hg38)
End
68810431/68810431 (Hg38)
Location type
Intronic
Target gene
PIP5K1B
Nearest miRNA
hsa-mir-101-2/Upstream/27576596; hsa-let-7a-1/Downstream/1999544;
Nearest TSS
ENST00000422679/Upstream/30397; ENST00000396366/Downstream/32844;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/29855, chr9-CpG: 41/Downstream/203060
Nearby gene
FRG1HP(-62059) ; PGM5P2(+269813) ;
Upstream sequence
caacctccacctcccaggttcaagcgattcccctgcctcagcctcccaagtagctggtattatagacatgcaccaccacccccagctaatttttgtgtgt
Downstream sequence
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACCCTCCCACCCCGACCATTTGTTGAAGGGAATCACCACTGTCAGACTTCAATCCAACA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate