Basic Information
VIS ID
TVIS10004456
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100789167/98026885 (Hg38)
End
100789167/98026885 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/663204; hsa-mir-12126/Downstream/202264;
Nearest TSS
ENST00000422679/Upstream/28271; ENST00000480925/Downstream/29854;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/41399, chr9-CpG: 51/Downstream/29562
Nearby gene
ANP32B(-10943) ; NANS(+29792) ;
Upstream sequence
gcaatcaaaataaagaagggtgaaaatatcaACAATGGAACACATACAGCACCATTTATTTCAAAATTGTAGAGGAAGCCTCAGATGAATCTGTGTTACA
Downstream sequence
agacagagtctctccgtcgcccaggctggagtgcagtggcgcgatctccactcactgcaggctccgccccctggagttcacgccatttcctgcctcagcc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate