VISDB Viral Integration Site DataBase

VIS ID

TVIS10004462

Fusion event

HBV-BTF3L4 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr1

Cytoband

p32.3

Reference genome

Start

End

52549669/52083997 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-186-5p ; hsa-mir-125a-3p ; hsa-mir-194-5p ; hsa-mir-515-5p ; hsa-mir-519e-5p ; hsa-mir-552-3p ; hsa-mir-628-3p ; hsa-mir-654-3p ; hsa-mir-802 ; hsa-mir-4273 ; hsa-mir-3607-3p ; hsa-mir-3686 ; hsa-mir-3923 ; hsa-mir-7156-5p ; hsa-mir-495-3p ; hsa-mir-4477a ; hsa-mir-4728-3p ; hsa-mir-5688 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-30b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-551b-5p ; hsa-mir-1468-3p ; hsa-mir-454-3p ; hsa-mir-766-5p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-323b-3p ; hsa-mir-3192-5p ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3613-3p ; hsa-mir-3666 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-548aj-5p ; hsa-mir-3689c ; hsa-mir-1343-3p ; hsa-mir-4698 ; hsa-mir-548aw ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6783-3p ; hsa-mir-7106-5p ; hsa-mir-1273h-5p ; hsa-mir-8063 ; hsa-mir-30c-2-3p ; hsa-mir-143-3p ; hsa-mir-30c-1-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-2113 ; hsa-mir-4641 ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6731-5p ; hsa-mir-6788-5p ; hsa-mir-6878-5p ; hsa-mir-8085 ; hsa-mir-6755-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-197-5p ; hsa-mir-651-3p ; hsa-mir-877-5p ; hsa-mir-1249-5p ; hsa-mir-3125 ; hsa-mir-3132 ; hsa-mir-3916 ; hsa-mir-4451 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6515-5p ; hsa-mir-6797-5p ; hsa-mir-6859-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p ; hsa-mir-3163 ; hsa-mir-875-5p ; hsa-mir-3145-3p ; hsa-mir-4777-3p ; hsa-mir-627-5p ; hsa-mir-105-5p ; hsa-mir-7853-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4778-5p ; hsa-mir-1277-5p ; hsa-mir-4706 ; hsa-mir-6883-5p ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-486-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-924 ; hsa-mir-2117 ; hsa-mir-136-5p ; hsa-mir-4716-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3688-5p ; hsa-mir-4470 ; hsa-mir-5693 ; hsa-mir-605-5p ; hsa-mir-767-5p ; hsa-mir-3130-3p ; hsa-mir-29c-5p

Nearest miRNA

hsa-mir-12136/Upstream/247595; hsa-mir-101-1/Downstream/1970082;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/27373, chr1-CpG: 136/Downstream/57731

Upstream sequence

taatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagctgagatcatgccattgcactctagcctggg

Downstream sequence

caacaagagggaaactccgtctcaaaaaaaaaaaaaaagaaTATTCGGAAACATTTTGGTAGTAATAATAGTAAGTTGAGAAGTAATTACCTAAAAGGGT