Basic Information
VIS ID
TVIS10004469
Fusion event
HBV-MIR3134 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q32
Reference genome
GRCh37/hg19
Start
114905242/112142962 (Hg38)
End
114905242/112142962 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA9E
Target gene
MIR3134
Nearest miRNA
hsa-let-7a-1/Upstream/210793; hsa-mir-12126/Downstream/2066472;
Nearest TSS
ENST00000422679/Upstream/374; ENST00000480881/Downstream/3214;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/245469, chr9-CpG: 90/Downstream/31912
Upstream sequence
accatgttggccaggctggtctcgaactcctgatcttaggtgatccgcctgcctcggcctcccagagtgctgggattacaggtgcgagccactgtgctgg
Downstream sequence
tttttttttttttttttttttttttttttttttttttttaagacagagatctcactctgttgtccaggctggagtgcaatggcatgatctcggctcattg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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