Basic Information
VIS ID
TVIS10004482
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
28691589/28446443 (Hg38)
End
28691589/28446443 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1268a/Upstream/19859; hsa-mir-10393/Downstream/44309;
Nearest TSS
ENST00000557528/Upstream/67039; ENST00000559709/Downstream/83969;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/43079, chr15-CpG: 72/Downstream/8261
Nearby gene
MIR4509-3(-19859) ;
Upstream sequence
TTCATGAACTGCTCTCCTGGAGATGAAGAGAAGTGTTTTACTTTGCCAAttttttttttttttttttttttttttgagacagagtttccctcttgttgcc
Downstream sequence
caggctggagtgcaatggcgcaatctcggctcgctgcaacctccgcctcccggattcaagagattctcctgcctcagcctccagagcagctgggattaca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate