Basic Information
VIS ID
TVIS10004487
Fusion event
HBV-SUGCT integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
40341823/40302224 (Hg38)
End
40341823/40302224 (Hg38)
Location type
Intronic
Target gene
SUGCT
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-1183/Upstream/3382792; hsa-mir-10399/Downstream/2848671;
Nearest TSS
ENST00000635602/Upstream/27713; ENST00000460466/Downstream/244704;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/166805, chr7-CpG: 26/Downstream/1403356
Upstream sequence
atatctatgtatttatcttgcagaagtagaaagatgtgtgcacaaggatattcatagcagtacagtgtaaaatagcaaaaaaaaaatggaggtaggttac
Downstream sequence
tcctcctttggcctttagacatcacaccacctgttattcttcccacctgttttttttgtcccctccttggttgactccAGTGGTCTGCCCTTGTCCTCTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate