Basic Information
VIS ID
TVIS10004491
Fusion event
HBV-LINC01727 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
21565435/21584797 (Hg38)
End
21565435/21584797 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC01727
Nearest miRNA
hsa-mir-103a-2/Upstream/3114106; hsa-mir-1-1/Downstream/4623389;
Nearest TSS
ENST00000382410/Upstream/14659; ENST00000624367/Downstream/27751;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/61504, chr20-CpG: 50/Downstream/118309
Upstream sequence
CATCTTGTTGAGGAGAGAAATCAAATAGAACAAAGGGAAAGATTGTCCAAAATGGTGGTCTCTGGGGTAGGAACTGCACCATGGCTGCTGGCTGCTAACA
Downstream sequence
CGGGAGGCGGATCCCACTCTAACATGGGTGACTTGGGAGAAAGCCTCCCTCAGAGAGGTTCCCTGTGTGGGCACAGAGGGATCAGGCTTTCCAACGCTCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate