Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004499
Fusion event
HBV-TSNAX-DISC1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
End
232135730/231999984 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/980060; hsa-mir-1537/Downstream/1624168;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/372615, chr1-CpG: 173/Downstream/629358
Upstream sequence
aatgaaaggaaccacactgcaatggcttcaaaaataaaaattccattggaaccacatatagaaaagtaggacgggacctgcatgataaagctaaacagaa
Downstream sequence
ttccctcataaaataaaaaaattaaatggaactcaacgttttttaacataatgacccacatgcccaagatataattaggaaccattcatcataacaaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.