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VISDB
Viral Integration Site DataBase
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TVIS10004505
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004505
Fusion event
HBV-HIVEP3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
42242154/41776483 (Hg38)
End
42242154/41776483 (Hg38)
Location type
Intronic
Target gene
HIVEP3
miRNAs that regulate target gene
hsa-mir-10a-5p
;
hsa-mir-26b-5p
;
hsa-mir-218-5p
;
hsa-mir-149-3p
;
hsa-mir-6795-5p
;
hsa-mir-6887-5p
;
hsa-mir-625-5p
;
hsa-mir-486-3p
;
hsa-mir-6721-5p
;
hsa-mir-92b-5p
;
hsa-mir-4763-3p
;
hsa-mir-1207-5p
;
hsa-mir-4524a-3p
;
hsa-mir-211-3p
;
hsa-mir-6743-5p
;
hsa-mir-4688
;
hsa-mir-4524b-3p
;
hsa-mir-6079
;
hsa-mir-3118
;
hsa-mir-134-5p
;
hsa-mir-920
;
hsa-mir-6726-5p
;
hsa-mir-5591-5p
;
hsa-mir-4300
;
hsa-mir-6090
;
hsa-mir-6081
;
hsa-mir-3192-5p
;
hsa-mir-4538
;
hsa-mir-4453
;
hsa-mir-100-3p
;
hsa-mir-6827-5p
;
hsa-mir-4753-3p
;
hsa-mir-6873-3p
;
hsa-mir-7111-3p
;
hsa-mir-130b-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-6769b-3p
;
hsa-mir-4723-3p
;
hsa-mir-5196-3p
;
hsa-mir-3183
;
hsa-mir-3591-3p
;
hsa-mir-21-3p
;
hsa-mir-6868-3p
;
hsa-mir-505-5p
;
hsa-mir-4290
;
hsa-mir-3194-5p
;
hsa-mir-1237-3p
;
hsa-mir-1248
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-4687-5p
;
hsa-mir-4667-3p
;
hsa-mir-6858-3p
;
hsa-mir-4494
;
hsa-mir-499b-5p
;
hsa-mir-5586-5p
;
hsa-mir-665
;
hsa-mir-145-3p
;
hsa-mir-2355-5p
;
hsa-mir-4794
;
hsa-mir-5580-5p
;
hsa-mir-652-5p
;
hsa-mir-664a-5p
;
hsa-mir-6732-3p
Nearest miRNA
hsa-mir-12136/Upstream/1019111; hsa-mir-101-1/Downstream/1395169;
Nearest TSS
ENST00000473358/Upstream/114158;
ENST00000372581/Downstream/93147;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/113522
,
chr1-CpG: 38/Downstream/141486
Nearest cancer related gene
HIVEP3
(TSG, No orient, 0)
Upstream sequence
TGAGCCAGTGTTTTGGGCAGTGGGGTGTGTGCATATGCTCTGGGGGCAGGGTCAGGCTGACTGGGTCCTTGAGATAATCTCTTTCCACCAGTGGCCGTGG
Downstream sequence
GACATCTCGGTCTGTCTTTGGGTCTGTCTGCTTATGAAAGGTGGCCCTTTGTCCTTATGCAGGTGAAGATGAGGCTGCAGACCAGCCTGTGACACCCATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
084623N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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