CDH13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004513
Fusion event
HBV-CDH13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
83595008/83561403 (Hg38)
End
83595008/83561403 (Hg38)
Location type
Intronic
Target gene
CDH13
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-181a-5p ; hsa-mir-4464 ; hsa-mir-4307 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-31-3p ; hsa-mir-367-5p ; hsa-mir-1266-3p
Nearest miRNA
hsa-mir-1225/Upstream/52995; hsa-mir-11401/Downstream/1646393;
Nearest TSS
ENST00000527434/Upstream/163233; ENST00000562307/Downstream/93417;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/933195, chr16-CpG: 67/Downstream/246404
Nearest cancer related gene
CDH13(TSG, No orient, 0)
Upstream sequence
ggtgtggtgacgcatgggaggctgaggcaggagaattatttgaacctgagaggcggaggttgtggtgagctgagattgtgccattgcacttcagcctgag
Downstream sequence
caacaagagggaaacaccatctcaaaaaaaaaaaaaaaaaaaaCTTCAAGCAAGGGAGGCTATGCTATCAAAGTATATTTTCCTCCTCTTCTGCAAGGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate