CDH13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004514
Fusion event
HBV-CDH13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q23.3
Reference genome
End
83595032/83561427 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/53019; hsa-mir-11401/Downstream/1646369;
Nearest cancer related gene
CDH13(TSG, No orient, 0)
Upstream sequence
aggcaggagaattatttgaacctgagaggcggaggttgtggtgagctgagattgtgccattgcacttcagcctgagcaacaagagggaaacaccatctca
Downstream sequence
aaaaaaaaaaaaaaaaaaaCTTCAAGCAAGGGAGGCTATGCTATCAAAGTATATTTTCCTCCTCTTCTGCAAGGGGTCTACATTTAAGTCAATAGTAGCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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