Basic Information
VIS ID
TVIS10004517
Fusion event
HBV-LOC105372088 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
41474117/43894152 (Hg38)
End
41474117/43894152 (Hg38)
Location type
Intronic
Target gene
LOC105372088
Nearest miRNA
hsa-mir-1-2/Upstream/4217373; hsa-mir-122/Downstream/1075930;
Nearest TSS
ENST00000575820/Upstream/616502; ENST00000591940/Downstream/637503;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/4052287, chr18-CpG: 180/Downstream/784866
Nearby gene
SYT4(-616502) ; SETBP1(+786021) ;
Upstream sequence
TTGGTGTCTCCAGCACAAGTACTTACTCAATTTTTGTTAAGATTACTTCTAACAGCCTTGCTAACTGGTCCTTCAGGCCACAATCATTCCACATATGCTT
Downstream sequence
CCTTTTATAAATAAATATCCTCAAATATCCTTGCCCTTCTACCATACTTTCACTTGAGAAATAAGACAGTATTTCTAACATTTATAGCATTATTGTTATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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