Basic Information
VIS ID
TVIS10004518
Fusion event
HBV-LINC00907 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
39901362/42321397 (Hg38)
End
39901362/42321397 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00907
Nearest miRNA
hsa-mir-1-2/Upstream/2644618; hsa-mir-122/Downstream/2648685;
Nearest TSS
ENST00000575820/Upstream/95433; ENST00000591940/Downstream/652698;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2479532, chr18-CpG: 180/Downstream/2357621
Upstream sequence
tctgaattgtggaccccacccaggaactgattcagtgcaagaggaaagctttgacttcctatgatttcatctctgacccaaccaatcagcactcccaact
Downstream sequence
cactggcccccccacccaccaaattatccttaaaatctctgatccccgaatgctcacaagactgacttgagtaataataaaactcaggtctcccacacag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate