DHX30 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004521
Fusion event
HBV-DHX30 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
47869933/47828443 (Hg38)
End
47869933/47828443 (Hg38)
Location type
Intronic
Target gene
DHX30
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-93-3p ; hsa-mir-589-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-1260b
Nearest miRNA
hsa-mir-12127/Upstream/2966462; hsa-let-7g/Downstream/21112;
Nearest TSS
ENST00000440867/Upstream/1070; ENST00000461905/Downstream/17059;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3051, chr3-CpG: 23/Downstream/17892
Upstream sequence
ACGACACTCAATGGAACACTGATCTAGCATACCCTTTCTACCTTTTGGTTGTTGTTGCTGCTAAACATTTCTTCCCAGAATATAATGCTATTACAAGTTG
Downstream sequence
cgtgagatcctgtcccccacaaaaaaaaaaaaaaaaaaaaaGATGAggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate