Basic Information
VIS ID
TVIS10004526
Fusion event
HBV-LOC105369944 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
102992464/102598686 (Hg38)
End
102992464/102598686 (Hg38)
Location type
Intronic
Target gene
LOC105369944
Nearest miRNA
hsa-let-7i/Upstream/2408737; hsa-mir-1178/Downstream/1331739;
Nearest TSS
ENST00000382841/Upstream/116942; ENST00000266744/Downstream/225713;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/478515, chr12-CpG: 38/Downstream/225656
Nearby gene
IGF1(-118086) ; LINC00485(+210597) ;
Upstream sequence
GTTCTCGTTCCATTTTTTTTTATGTAAAAAATAAGAAACAAATGACAAAATGTTGATGCTTCTTAATTTCTAGTGTTGGGCATATAGATATGTGTGTTTT
Downstream sequence
ACTTTCTCTTTTTATGTTTAATTTAGCTTGTTCAAAATTGAAGAGAAAAATATTCATTTAGAATAGAGGagtacagcagagtggttatgaagatgagctt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate