BTBD11 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10004528
Fusion event
HBV-BTBD11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
107980285/107586508 (Hg38)
End
107980285/107586508 (Hg38)
Location type
Intronic
Target gene
BTBD11
Nearest miRNA
hsa-let-7i/Upstream/2994792; hsa-mir-1178/Downstream/1049302;
Nearest TSS
ENST00000382841/Upstream/5858; ENST00000494235/Downstream/31213;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/4980, chr12-CpG: 38/Downstream/99157
Upstream sequence
CAGAAACTTCTCTCTCCTCTCTCCTTGAATGCCCTTGTCCTTCACTGGCCCTGAACAAATCCTGCAACTCCCCACAGACTCTCCGGCTGGGCTGCCAACC
Downstream sequence
CCTTCTTCACCTCCAGCAGACATCACACTCCATGCCACGGCCCTGTGGTGACCCATTTGGAGCCGCTGCCTCCCCCGAACTGATGTCAATGCATTAGCGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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