VISDB Viral Integration Site DataBase

VIS ID

TVIS10004529

Fusion event

HBV-PCGF3 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

698763/704974 (Hg38)

Location type

Promoter

Target gene

miRNAs that regulate target gene

hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-mir-223-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-379-5p ; hsa-mir-511-3p ; hsa-mir-1304-5p ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-3529-5p ; hsa-mir-4524b-3p ; hsa-mir-6831-5p ; hsa-mir-8055 ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-3977 ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-4291 ; hsa-mir-3613-5p ; hsa-mir-202-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-664a-3p ; hsa-mir-3151-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6787-5p ; hsa-mir-6731-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-204-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3192-5p ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-4314 ; hsa-mir-4646-5p ; hsa-mir-619-5p ; hsa-mir-6506-5p ; hsa-mir-6741-3p ; hsa-mir-6788-5p ; hsa-mir-6878-5p ; hsa-mir-760 ; hsa-mir-7851-3p ; hsa-mir-873-3p ; hsa-mir-2276-3p ; hsa-mir-335-3p ; hsa-mir-3611 ; hsa-mir-3616-5p ; hsa-mir-4708-3p ; hsa-mir-4793-5p ; hsa-mir-4795-5p ; hsa-mir-5196-3p ; hsa-mir-573

Nearest miRNA

hsa-mir-571/Upstream/354722; hsa-mir-12113/Downstream/1281410;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/71, chr4-CpG: 78/Downstream/436

Upstream sequence

ACTATTATTTTTCCATTTAAATGGCAATCAATTTATGTACTACCAAAGCAAATTAAGAGCCAAAATGTATCTTATTATACCTAAGCATCAAAATTTGTCT

Downstream sequence

ccctaatcctgaccctaaccctaaacccaaccctaaccctaaacctaacccctaactctgaccctacccctaatcctgaccctaaccgtaaaaccaaccc